PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g26190.1
Common NameLR48_Vigan02g008700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 170aa    MW: 19350.2 Da    PI: 9.4977
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g26190.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.27.1e-172878255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                     ++GVr+++ +g+++AeIrd +    +  r++lg+f+ ae Aa a+++a+  ++g
  Vang06g26190.1 28 SFRGVRRRP-WGKFAAEIRDSTR---HgIRVWLGTFDNAEAAALAYDQAAFVMRG 78
                    59*******.**********422...25**********************99998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.35E-172785No hitNo description
Gene3DG3DSA:3.30.730.101.3E-282886IPR001471AP2/ERF domain
SMARTSM003807.8E-342892IPR001471AP2/ERF domain
PROSITE profilePS5103221.9042886IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-212987IPR016177DNA-binding domain
PRINTSPR003671.6E-92940IPR001471AP2/ERF domain
PfamPF008477.8E-122978IPR001471AP2/ERF domain
PRINTSPR003671.6E-95268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MLLYGMITSY QEQNNSCKLI IKEKEGKSFR GVRRRPWGKF AAEIRDSTRH GIRVWLGTFD  60
NAEAAALAYD QAAFVMRGSA AVLNFSVEKV KESLRDMDCS FSQLEGCSPV VALKRRHSLR  120
RKMTTKKKKE ETQESDSVRL ENVVVLEDLG KEYLEQLLMM SSSDARCTW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-272587264ATERF1
3gcc_A5e-272587264ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113128KRRHSLRRKMTTKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014513234.11e-100PREDICTED: ethylene-responsive transcription factor 1B-like
SwissprotQ8LDC82e-68ERF92_ARATH; Ethylene-responsive transcription factor 1B
TrEMBLA0A0L9TU536e-97A0A0L9TU53_PHAAN; Uncharacterized protein
STRINGGLYMA02G00870.11e-72(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.12e-54ethylene response factor 1
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]